PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604044.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 339aa    MW: 37491.3 Da    PI: 8.6703
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-18183237256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_009604044.1 183 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 237
                     788899***********************************************98 PP
2HD-ZIP_I/II127.55.7e-41183273192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk
  XP_009604044.1 183 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQELR-ALK 273
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-18172240IPR009057Homeodomain-like
PROSITE profilePS5007117.135179239IPR001356Homeobox domain
SMARTSM003896.9E-16181243IPR001356Homeobox domain
PfamPF000461.7E-15183237IPR001356Homeobox domain
CDDcd000861.07E-14183240No hitNo description
Gene3DG3DSA:1.10.10.602.8E-17183237IPR009057Homeodomain-like
PROSITE patternPS000270214237IPR017970Homeobox, conserved site
PfamPF021836.0E-10239273IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-25239282IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MELALSLGGD TPKSFLFLEK SSSSSSLHEK LNSSKDLGFC MGLGKCNEDK IRKNKQRRSQ  60
DLKEDHESKG SSDPLLQLDL LPFSPVSRDT SSQLHFPWLT ENTAEPGPAG KVLNMNRRQL  120
VAEEAEEGAA LSSPNSAIST FQVNIPIYRN GNMLLGKRES EGDVERWGNS SSRASDEEDG  180
SARKKLRLTK EQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ  240
TEVDCEYLKK CCETLTEENK RLQKELQELR ALKSSQPFYM QLPATTLTMC PSCERVVTAT  300
SSAAAASAAA AAANTTLTLA KPGPFPFSPA QVQAPQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231239RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604044.10.0PREDICTED: homeobox-leucine zipper protein HAT14 isoform X2
SwissprotP466651e-95HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A068URD41e-142A0A068URD4_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000609511e-130(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-71homeobox from Arabidopsis thaliana